Tarapore,D., A.L. Christensen, P.U. Lima and J. Carneiro (2012) Environment classification in multiagent systems inspired by the adaptive immune system. Artificial Life 13, 275–282 [pdf 676Kb]
Pimentel, A., J. Carneiro, A. Darszon, and G. Corkidi. (2012) A Segmentation Algorithm for Automated Tracking of Fast Swimming Unlabelled Cells in Three-dimensions. J. Microscopy. 245, 72-81. [pdf 468Kb]
Serrano, M., G. Real, J. Santos, J. Carneiro, C.P. Moran Jr., and AO Henriques. (2011) A Negative Feedback Loop that Limits the Ectopic Activation of a Cell Type-Specific Sporulation Sigma Factor of Bacillus subtilis. PLoS Genetics. 7, e1002220. [PDF 1.5Mb]
Vélez de Mendizábal, N., J. Carneiro, R.V. Solé, J. Goñi , J. Bragard, I. Martinez-Forero, S. Martinez-Pasamar, J. Sepulcre , J. Torrealdea, F. Bagnato, J. Garcia-Ojalvo, and P. Villoslada. (2011) Modeling the effector - regulatory T cell cross-regulation reveals the intrinsic character of relapses in Multiple Sclerosis. BMC Systems Biology 5, 114. [PDF 2.8Mb]
Guerrero, A., J. Carneiro, A. Pimentel, C.D. Wood , G. Corkidi, A. Darszon. (2011) Strategies for locating the female gamete: the importance of measuring sperm trajectories in three spatial dimensions. Mol. Hum. Reprod. 17, 511-23. [PDF 488Kb]
Sepulveda, N. and J. Carneiro. (2011) Repertoire dynamics of peripheral regulatory and effector T cells competing for antigen presenting cells. In: Mathematical Models and Immune Cell Biology (Editors: Lythe and Molina-Paris). Elsevier.
Larsen, R., R. Gozzelino , V. Jeney , L. Tokaji, F.A. Bozza, A. M. Japiassu , D. Bonaparte, M.M. Cavalcante, A. Chora, A. Ferreira, I. Marguti, S. Cardoso, N. Sepulveda, A. Smith, and M.P. Soares. (2010) Transforming growth factor beta 2 and heme oxygenase 1 genes are risk factors for the cerebral malaria syndrome in Angolan children. Sci. Transl. Med. 2, 51ra71.
Sambo, M.R., M.J. Trovoada MJ, C. Benchimol, V. Quinhentos, L. Gonçalves, R. Velosa, M.I. Marques, N. Sepulveda, T.G. Clark, S. Mustafa, O. Wagner, A. Coutinho, and C. Penha-Gonçalves. (2010) Transforming growth factor beta 2 and heme oxygenase 1 genes are risk factors for the cerebral malaria syndrome in Angolan children. PLoS One 5, e11141.
Guerrero, A., C.D. Wood CD, T. Nishigaki, J. Carneiro, and A. Darszon. (2010) Tuning sperm chemotaxis. Biochem. Soc. Trans. 38, 1270-1273. [PDF 304Kb]
Naldi, A., J. Carneiro, C. Chaouiya, and D. Thieffry. (2010) Diversity and plasticity of Th cell types predicted from regulatory network modelling. PLoS Comp. Biol. 6, e1000912. [PDF 528Kb]
Guerrero, A., T. Nishigaki, J. Carneiro, Y. Tatsu, C.D. Wood, and A. Darszon. (2010) Tuning sperm chemotaxis by calcium burst timing. Dev. Biol. 344, 52-65. [PDF 1Mb]
Sepulveda, N., C.D. Paulino, and J. Carneiro. (2010) Estimation of T-cell repertoire diversity and clonal size distribution by Poisson abundance models. J. Immunol. Methods. 353, 124-137. [PDF 2.6Mb]
Sepulveda, N. (2009) How is the T-cell repertoire shaped ? Ph.D. thesis. University of Porto. [PDF 6Mb]
Sepulveda, N., C.D. Paulino, C. Penha-Goncalves (2009) Bayesian analysis of allelic penetrance models for complex binary traits. Comp. Stat. Data Anal. 53, 1271-1283.
Carneiro J. , L. Duarte, and E. Padovan (2009) Limiting dilution analysis of antigen-specific T cells. In: Methods in Molecular Biology/Molecular Medicine. Humana Press. [PDF 292Kb]
Certal, A.C., R.B. Almeida, E. Wong, N. Moreno,J. Carneiro, J. Rodriguez-Leon, H.-M. Wu, A.Y. Cheung, and J. Feijo. (2008). Differential exclusion of proton ATPases from the apical membrane is associated with cell polarity and apical growth in pollen tubes. Plant Cell 20, 614-34 [PDF 1.4Mb]
Souto-Carneiro,MM, R. Fritsch, N. Sepulveda, et al. (2008). The NF-kB canonical pathway is involved in the control of the exonucleolytic processing of coding ends during V(D)J recombination. J. Immunol. 180, 1040-1049.Leon, K., K. Garcia, J. Carneiro, and A. Lage. (2007). How regulatory CD25+CD4+T cells impinge on tumor immunobiology: On the differential response of tumors to therapies. J. Immunol. 179, 5659-5668. [PDF 288Kb]
Sepulveda, N., C.D. Paulino, J. Carneiro, C. Penha-Goncalves. (2007) Allelic Penetrance Approach As a Tool To Model Two-Locus Interaction in Complex Binary Traits. Heredity 99, 173-84. [PDF 208Kb]
Paixao, T., T.P. Carvalho, D.P. Calado, and J. Carneiro. (2007). Quantitative insights into stochastic monoallelic expression of cytokine genes. Immunol. Cell. Biology 85, 315-322. [PDF 280Kb]
Leon, K., K. Garcia, J. Carneiro, and A. Lage. (2007). How regulatory CD25+CD4+T cells impinge on tumor immunobiology? On the existence of two alternative dynamical classes of tumors. J. Theor. Biol. 247, 122-137.Carneiro J. , K. Leon, I. Caramalho, C. van den Dool, R. Gardner, V. Oliveira, M.-L. Bergman, N. Sepulveda, T. Paixao, J. Faro, and J. Demengeot. (2007) When three is not a crowd: A crossregulation model of the dynamics and repertoire selection of regulatory CD4 T cells. Immunol. Reviews 216, 48-68. [PDF 2.9Mb]
Milutinovic, D, J. Carneiro, M.Athans, and P. Lima (2007) Modeling Dynamics of Cell Population Molecule Expression Distribution. Nonlinear Analysis Hybrid Systems 1, 81-94. [PDF 792Kb]
